Publications

2026

Stimulating New Ways of Thinking in Agricultural Microbiome Research: A Community-Based Interactive Thinkathon Workshop

Open Access

J.P. Dundore-Arias, M. Michalska-Smith, Z.A. Hansen, S. Klasek, B.R. Lane, L.L. Kinkel

Subinhibitory concentrations of antibiotics mediate primary metabolism and shape diverse species interactions among coevolved soil Streptomyces

Open Access

M.A. Kuhs, Z.A. Hansen, M.J. Michalska-Smith, J.R. Ahlborn, L.L. Kinkel

2025

Landscape-scale analysis of raccoon rabies surveillance reveals different drivers of disease dynamics across latitude

Open Access

M. Michalska-Smith, M.E. Craft, A.J. Davis, A.T. Gilbert, R.B. Chipman, J. Kirby, K.M. Nelson, X. Ma, R. Wallace, G. Miller, K.M. Pepin

2024

Location, Age, and Antibodies Predict Avian Influenza Virus Shedding in Ring-Billed and Franklin’s Gulls in Minnesota

Open Access

M. Michalska-Smith, E. Clements, E. Rasmussen, M.R. Culhane, M.E. Craft

Soil nutrient amendment increases the potential for inter-kingdom resource competition among foliar endophytes

Open Access

Z.A. Hansen, M.R. Fulcher, N. Wornson, S.A. Spawn-Lee, M. Johnson, Z. Song, M. Michalska-Smith, G. May, E.W. Seabloom, E.T. Borer, L.L. Kinkel

Plant community richness and foliar fungicides impact soil Streptomyces inhibition, resistance, and resource use phenotypes

Open Access

M. Michalska-Smith, D.C. Schlatter, N. Pombubpa, S.C. Castle, A.S. Grandy, E.T. Borer, E.W. Seabloom, L.L. Kinkel

Ecological factors alter how spatial overlap predicts viral infection dynamics in wild rodent populations

Preprint

J. Mistrick, J.S. Veitch, K.E. Wearing, S.M. Kitchen, S. Clague, S. Du, M. Michalska-Smith, B.C. Newman, T. Sironen, C.E. Cressler, R.J. Hall, S.A. Budischak, K.M. Forbes, M.E. Craft

2023

More than the Sum of its Parts: Unlocking the Power of Network Structure for Understanding Organization and Function in Microbiomes

Open Access

J.P. Dundore-Arias*, M.J. Michalska-Smith*, M. Millican*, L.L. Kinkel

The illusion of personal health decisions for infectious disease management: disease spread in social contact networks

Open Access

M. Michalska-Smith, E.A. Enns, L.A. White, M.L.J. Gilbertson, M.E. Craft

Shortcomings of reusing species interaction networks created by different sets of researchers

Open Access

C. Brimacombe, K. Bodner, M. Michalska-Smith, T. Poisot, M. Fortin

2022

Network structure of resource use and niche overlap within the endophytic microbiome

Open Access

M. Michalska-Smith, Z. Song, S.A. Spawn-Lee, Z.A. Hansen, M. Johnson, G. May, E.T. Borer, E.W. Seabloom, L.L. Kinkel

Asymmetric host movement reshapes local disease dynamics in metapopulations

Open Access

M. Michalska-Smith, K. VanderWaal, M.E. Craft

Ecological and evolutionary dynamics of multi-strain RNA viruses

Open Access

D. Makau, S. Lycett, M. Michalska-Smith, I. Paploski, M. Cheeran, M. Craft, R. Kao, D. Schroeder, A. Doeschl-Wilson

No strong evidence that modularity, specialization, or nestedness are linked to seasonal climatic variability in bipartite networks across large spatial extents

Journal version

C. Brimacombe, K. Bodner, M. Michalska-Smith, D. Gravel, M. Fortin

2021

Consequences of ignoring dispersal variation in network models for landscape connectivity

Journal version PDF

L.L. Sullivan, M.J. Michalska-Smith, K.P. Sperry, D.A. Moeller, A.K. Shaw

Lessons from movement ecology for the return to work: modeling contacts and the spread of COVID-19

Open Access

A.K. Shaw, L.A. White, M. Michalska-Smith, E.T. Borer, M.E. Craft, E.W. Seabloom, E. Snell-Rood, M. Travisano

2020

Broadening Participation in Scientific Conferences during the Era of Social Distancing

Open Access

M.R. Fulcher, M.L. Bolton, M.D. Millican, M.J. Michalska-Smith, J.P. Dundore-Arias, J. Handelsman, J.L. Klassen, K.C. Milligan-Myhre, A. Shade, B.E. Wolfe, L.L. Kinkel

2019

Telling ecological networks apart by their structure: A computational challenge

Open Access

M.J. Michalska-Smith, S. Allesina

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Open Access

T.H. Bell, K.L. Hockett, R.I. Alcalá-Briseño, M. Barbercheck, G.A. Beattie, M.A. Bruns, J.E. Carlson, T. Chung, A. Collins, B. Emmett, P. Esker, K.A. Garrett, L. Glenna, B.K. Gugino, M.d.M. Jiménez-Gasco, L. Kinkel, J. Kovac, K.P. Kowalski, G. Kuldau, J.H.J. Leveau, M. Michalska-Smith, J. Myrick, K. Peter, M.F.V. Salazar, A. Shade, N. Stopnisek, X. Tan, A.T. Welty, K. Wickings, E. Yergeau